Mindell, D. P. (1991). Aligning DNA sequences: Homology and phylogenetic weighting. In Phylo-genetic Analysis of DNA Sequences, M. M. Miyamoto and J. Cracraft, Eds. (New York: Oxford University Press), pp. 73-89
Morrison, D. A., and Ellis, J. T. (1997). Effects of nucleotide sequence alignment on phylogeny estimation: A case study of 18S rDNAs of Apicomplexa. Mol. Biol. Evol. 14, 428-441
Nixon, K. C., and Carpenter, J. M. (1993). On outgroups. Cladistics 9, 413-426
Olsen, G. J., Matsuda, H., Hagstrom, R., and Overbeed, R. (1994). FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci. 10, 41
Penny, D., Lockhart, P. J., Steel, M. A., and Hendy, M. D. (1994). The role of models in reconstructing evolutionary trees. In Models in Phylogeny Reconstruction, Systematics Association Special Volume No. 52, R. W. Scotland, D. J. Siebert and D. M. Williams, Eds. (Oxford: Clarendon Press), pp. 211-230
Rzhetsky, A., and Nei, M. (1992). A simple method for estimating and testing minimum evolution trees. Mol. Biol. Evol. 9, 945-967
Rzhetsky, A., and Nei, M. (1994). METREE: A program package for inferring and testing minimun-evolution tress. Comput. Appl. Biosci. 10, 409-412
Saitou, N. (1996). Reconstruction of gene trees form sequence data. Methods Enzymol. 226, 427-449
Sanderson, M. J. (1989). Confidence limits on phylogenies: the bootstrap revisited. Cladistics 5, 113-129
Soltis, D. E., Soltis, P. S., Nickrent, D. L., Johnson, L. A., Hahn, W. A., Hoot, S. B., Sweere, J. A., Kuzoff, R. K., Kron, K. A., Chase, M. W., Swenson, S. M., Zimmer, A. A., Chaw, S.-M., Gillespie, L. J., Kress, W. J., and Sytsma, K. J. (1997). Angiosperm phylogeny inferred form 18S ribosomal DNA sequences. Ann. Missouri Bot. Garden 84, 1-49
Strimmer, K., and von Haeseler, A. (1996). Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13, 964-969
Sullivan, M. J., and Swofford, D. L. (1997) Are guinea pigs rodents? The importance of adequate models in molecular phylogenetics. J. Mammal. Evol. 4, 77-86
Swofford, D. L. (1990). PAUP. Phylogenetic Analysis Using Parsimony, Version 3.0. Computer program distributed by the Illinois Natural History Survey, Champaign, IL.
Swofford, D. L., (1997)
Swofford, D. L., and Olsen, G. J. (1990)
Swofford, D. L., Olsen, G. J., Waddell, P. J., and Hillis, D. M. (1996a). Phylogenetic inference. In Molecular Systematics, D. M. Hillis, C. Moritz and B. K. Mable, Eds. (Sunderland, MA: Sinauer Associates), pp. 407-514
Swofford, D. L., Thorne, J. L., Felsenstein, J., and Wiegmann, B. M. (1996b). The topology-dependent permutation test for monophyly does not test for monophyly. Syst. Biol. 45, 575-579
Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994). Clustal W: Improving the sensitivity of progressive multiple alignment through sequence weighting. Nucl. Acids Res 22, 4673-4680
Thorne, J. L., and Kishino, H. (1992). Freeing phylogenies form artifacts of alignment. Mol. Biol. Evol. 9, 118-1162
Weston, P. H. (1994). Methods for rooting cladistic trees. In Models in Phylogeny Reconstruction, R. W. Scotland, D. J. Siebert, and D. M. Williams, Eds. (Oxford: Systematics Association), pp. 125-155
Wheeler, W. C. (1994). Sources of ambiguity in nucleic acid sequence alignment. Exs 69, 323-352
上一篇:多序列比对的实际应用 下一篇:利用蛋白质序列的预测方法
共45页: 上一页 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] 44 [45] 下一页