DNA Arrays Methods and Protocols
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DNA Arrays Methods and Protocols

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Methods in Molecular Biology VOLUME170 DNA Arrays Methods and Protocols Edited by Jang B Rampal HUMANA PRESS 2001
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Preface ............................................................................................................. v
Contributors ..................................................................................................... i.r
1DNA Microarrays: History and Overview
Edwin M. Southern ............................................................................... 1
2Gel-Immobilized Microarrays of Nucleic Acids and Proteins:
Production and Application for Macromolecular Research
Jordanka Zlatanova and Andrei Mirzabekov .................................. 17
3Sequencing by Hybridization Arrays
Radoje Drmanac and Snezana Drmanac ......................................... 39
Ethical Ramifications of Genetic Analysis Using DNA Arrays
Wayne W. Grody ................................................................................. 53
Photolithographic Synthesis of High-Density Oligonucleotide Arrays
Glenn H. McGall and Jacqueline A. Fidanza ................................... 71
Automated Genotyping Using the DNA MassArrayTM Technology
Christian Jurinke, Dirk van den Boom, Charles R. Cantor,
and Hubert Koster ........................................................................ 103
Ink-Jet-Deposited Microspot Arrays of DNA and Other Bioactive
Molecules
Patrick Cooley, Debra Hinson, Hans-Jochen Trost,
Bogdan Antohe, and David Wallace .......................................... 1 17
Printing DNA Microarrays Using the Biomek'") 2000 Laboratory
Automation Workstation
David W. Galbraith, Jiri Macas, Elizabeth A. Pierson,
Wenying Xu, and Marcela Nouzova ........................................... 131
Hybridization Analysis of Labeled RNA by Oligonucleotide Arrays
Ulrich Certa, Antoine de Saizieu, and Jan Mous .......................... 14 1
Analysis of Nucleic Acids by Tandem Hybridization
Rogelio Maldonado-Rodriguez and Kenneth L. Beattie .............. 157
on Oligonucleotide Microarrays
11
DNA Sequencing by Hybridization with Arrays of Samples or Probes Antisense Reagents
Radoje Drmanac, Snezana Drmanac, Joerg Baier, Gloria Chui,
Dan Coleman, Robert Diaz, Darryl Gietzen, Aaron Hou,
Hui Jin, Tatjana Ukrainczyk, and Chongjun Xu ........................ 173
12 Using Oligonucleotide Scanning Arrays to Find Effective
Muhammad Sohail and Edwin M. Southern .................................. 181
13 Low-Resolution Typing of HLA-DQA1 Using DNA Microarray
Sarah H. Haddock, Christine Quartararo, Patrick Cooley,
Gene Expression Analysis on Medium-Density Oligonucleotide Arrays
Ralph Sinibaldi, Catherine O'Connell, Chris Seidel,
and Henry Rodriguez ................................................................... 21 1
14 Use of Bioinformatics in Arrays
Peter Kalocsai and Soheil Shams .................................................. 223
15 Confocal Scanning of Genetic Microarrays
Arthur E. Dixon and Savvas Damaskinos ..................................... 237
16 Business Aspects of Biochip Technologies
Kenneth E. Rubenstein .................................................................... 247
and Dat D. Dao .............................................................................. 201

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