Introduction
A modification of the basic immunofluorescence staining and flow cytometric analysis protocol can be used for the simultaneous analysis of surface molecules and intracellular cytokines at single-cell level. In this protocol, cells are first activated in vitro, stained for surface antigens, as in the regular staining protocol, then fixed and permeabilized to allow for anti-cytokine antibodies to stain intracellularly. In vitro stimulation of cells is usually required for detection of cytokines by flow cytometry since cytokine levels are typically too low in freshly-prepared cells. Stimulation of cells with the appropriate reagent will depend on the cell type and the experimental conditions. For example, to stimulate T cells to produce IFN-gamma, TNF-alpha, IL-2, and IL-4, a combination of PMA (a PKC activator) and Ionomycin (a calcium ionophore) or anti-CD3 antibodies are used. To induce IL-6, IL-10 or TNF-alpha production by monocytes, stimulation of PBMC's with LPS is used.
Note: Optimal stimulation period for induction of a given cytokine is variable and has to be determined. For example, the best time for detection of IL-6-producing cells by human LPS-activated monocytes is 6 hours, whereas IL-10 needs at least 24 hours stimulation.
In contrast to detection of secreted cytokines by ELISA, for detection of intracellular cytokines, it is necessary to block secretion of cytokines with reagents such as Monensin or Brefeldin A during the last few hours of the stimulation. It is advised that the investigators evaluate the use and efficacy of different protein transport inhibitors in their specific assay system.
Note: Generally, the non-specific background staining of fixed and permeabilized cells is higher than surface staining; therefore, extra protein such as BSA or FCS can be added to the staining buffer. Optimal concentration of the fluorochrome-conjugated anti-cytokine antibodies has to be determined experimentally. To confirm specificity of the staining, it is common to block the directly-conjugated anti-cytokine antibodies with excess amounts of unlabeled antibody. Alternatively, recombinant cytokines can be used for blocking.
eBioscience antibodies are available as Functional Grade (FG) Purified (sterile, endotoxin-tested, no azide), Purified, FITC, Cy5, PE, PE-Cy5, and APC conjugates. For more information about the properties of fluorescent dyes, please visit our Fluorescent Dyes page in our BestProtocols. The Functional Grade Purified format is recommended for neutralization studies. More antibodies are in development; if you do not see an antibody of your choice, please send us an e-mail so we may provide you timely product updates.
Table 1: Mouse Cytokine Intracellular Staining Quick Guide
Mouse Cytokine Intracellular Staining Quick Guide |
Mouse Cytokine |
Cell Source |
Activation |
Incubation Time |
Restimulation |
Intracellular Block |
Antibody |
IL-1aNEW!
mouse PEC
mINFg (100ng/ml)(2h4)/LPS (100ng/ml)(22hr)
2hr/22hr
-
Monensin
ALF-161
IL-1bNEW!
mouse PEC
mINFg (100ng/ml)(2h4)/LPS (100ng/ml)(22hr)
2hr/22hr
-
Monensin
B122
IL-2
mouse spleen
ConA (3ug/ml) (2d)/IL-2 (20ng/ml)+IL-4 (20ng/ml) (3d)
2d/3d
anti-CD3 (10ug/ml immobilized)+anti-CD28 (2ug/ml soluble) 5hr
Monensin
JES6-5H4
IL-4
mouse spleen
ConA (3ug/ml) (2d)/IL-2 (20ng/ml)+IL-4 (20ng/ml) (3d)
2d/3d
anti-CD3 (10ug/ml immobilized)+anti-CD28 (2ug/ml soluble) 5hr
Monensin
BVD6-24G2
IL-6
mouse spleen
ConA (3ug/ml) (2d)/IL-2 (20ng/ml)+IL-4 (20ng/ml) (3d)
2d/3d
anti-CD3 (10ug/ml immobilized)+anti-CD28 (2ug/ml soluble) 5hr
Monensin
MP5-20F3
IL-10
mouse spleen
ConA (3ug/ml) (2d)/IL-2 (20ng/ml)+IL-4 (20ng/ml) (3d)
2d/3d
anti-CD3 (10ug/ml immobilized)+anti-CD28 (2ug/ml soluble) 5hr
Monensin
JES5-16E3
IL-12
mouse PEC
mIFNg (100ng/ml) (2hr)/LPS (100ng/ml) (22hr)
2hr/22hr
-
Monensin
C17.8
GM-CSF
mouse spleen
ConA (3ug/ml) (2d)/IL-2 (20ng/ml)+IL-4 (20ng/ml) (3d)
2d/3d
anti-CD3 (10ug/ml immobilized)+anti-CD28 (2ug/ml soluble) 5hr
Monensin
MP1-22E9
IFN-g
mouse spleen
ConA (3ug/ml) (2d)/IL-2 (20ng/ml)+IL-4 (20ng/ml) (3d)
2d/3d
anti-CD3 (10ug/ml immobilized)+anti-CD28 (2ug/ml soluble) 5hr
Monensin
XMG1.2
TNF-a
mouse spleen
ConA (3ug/ml) (2d)/IL-2 (20ng/ml)+IL-4 (20ng/ml) (3d)
2d/3d
anti-CD3 (10ug/ml immobilized)+anti-CD28 (2ug/ml soluble) 5hr
Monensin
MP6-XT22
TNF-aNEW!
mouse spleen
ConA (3ug/ml) (2d)/IL-2 (20ng/ml)+IL-4 (20ng/ml) (3d)
2d/3d
anti-CD3 (10ug/ml immobilized)+anti-CD28 (2ug/ml soluble) 5hr
Monensin
TN3-19.12
Annotations: mouse PEC=mouse thioglycolate-elicited peritoneal macrophages; ConA=Concanavalin A; Iono=Ionomycin; LPS=Lipopolysaccharide; PMA=Phorbol Myristate Acetate; 2d=2 day culture; 5hr=5 hour culture
Table 2: Human Cytokine Intracellular Staining Quick Guide
Human Cytokine Intracellular Staining Quick Guide |
Human Cytokine |
Cell Source |
Activation |
Incubation Time |
Restimulation |
Intracellular Block |
Antibody |
IL-1aNEW!
PBMC
LPS 100ng/ml
24hr
-
Monensin
CRM8
IL-1bNEW!
PBMC
LPS 100ng/ml
24hr
-
Monensin
CRM56
IL-2
PBMC
PMA (30-50ng/ml)/Iono (1ug/ml)
5hr
-
Monensin
MQ1-17H12
IL-4
PBMC
anti-CD3 (10µg/ml, immobilized) + anti-CD28 (2µg/ml, soluble) + IL-2 (10ng/ml) + IL-4 (20ng/ml) (2d); IL-2 (10ng/ml) + IL-4 (20ng/ml) (3d)
2d/3d
PMA (5ng/ml) + Ionomycin (500ng/ml) (4hr)
Monensin
MP4-25D2
IL-6
PBMC
LPS 100ng/ml
5hr
-
Monensin
MQ2-13A5
IL-10
PBMC
LPS 100ng/ml
24hr
-
Monensin
JES3-9D7
IL-12
PBMC
hIFNg (100ng/ml) (2hr)/LPS (100ng/ml) (22hr)
2hr/22hr
-
Monensin
C8.6
IFN-g
PBMC
PMA (30-50ng/ml)/Iono (1ug/ml)
5hr
-
Monensin
4S.B3
TNF-a
PBMC
PMA (30-50ng/ml)/Iono (1ug/ml)
5hr
-
Monensin
MAb11
Annotations: Iono=Ionomycin; PMA=Phorbol Myristate Acetate; LPS=Lipopolysaccharide; 2d=2 day culture; 5hr=5 hour culture; LPS for activation of human PBMC obtained from Sigma (#L-8274)
Intracellular Cytokine Staining Protocol
Precautionary Note
- Prior to using antibodies, do a quick spin to recover the whole volume in small vials.
- We monitor our conjugated antibodies to make sure they are void of aggregation. Some protocols include a step of airfuging the antibody prior to multi-color flow analysis.
- For optimal performance of fluorochrome conjugated antibodies, wrap the vials with aluminum foil and store at 4°C in the dark. Do not freeze.
- When staining mouse antigens please note that fixation and/or delayed analysis may yield poor signal-to-noise for certain antigens. For best results, stain fresh mouse cells.
What You Need
Materials
- Directly fluorochrome-conjugated antibodies (see charts above) or Th1/Th2 Flow Panel
- Cells to be stained
- 12 x 75 mm round-bottom test tubes (Falcon Cat. No. 2008) or 96-well round-bottom microtiter plates
Buffers
- eBioscience IC Fixation Buffer, Cat. No. 00-8222
- eBioscience Permeabilization Buffer, Cat. No. 00-8333
Instruments
- Pipettes and pipettors
- Centrifuge
- Ice bucket or refrigerator
- Flow Cytometer
Experiment Duration
- Stimulation (variable depending on the cytokine of interest)
- 2-3 hours staining
Method
- Prepare target cells of interest (see specific instructions).
- Stain cell-surface antigen following the Surface Staining Protocol. The choice of the surface marker depends on the experimental question. For suggestions on best phenotypic markers for different cell types please see the appropriate BestPhenotyping Markers Chart: Mouse or Human.
- After the last wash, fix the cells by adding 100 µl of Fixation Solution while vortexing the tube and incubate in the dark at room temperature for 20 minutes.
- Add 1 ml of Permeabilization Buffer to each tube, centrifuge for 5 minutes and aspirate supernatant.
- Repeat step 4.
- Resuspend cells in 100 µl of Permeabilization Buffer and incubate in the dark at room temperature for 5 minutes.
- Dilute the optimal concentration of fluorochrome-conjugated anti-cytokine mAb in 20 µl Permeabilization Buffer and add to the appropriate tube. Mix by vortexing. A good range of conjugated antibody for this application is 0.5-0.06 µg/106 cells. eBioscience fluorochrome-conjugated anti-cytokine antibodies are also available in 20 µl/test sizes. If using these reagents, add 20 µl of pre-titrated antibody to the appropriate tube.
- Incubate in the dark at room temperature for 20 minutes.
- Add 1 ml of Permeabilization Buffer, centrifuge for 5 minutes and aspirate supernatant.
- Resuspend the cell pellet in 0.5 ml of Flow Staining Buffer.
- Run on a flow cytometer and analyze.
Table 3: Mouse Phenotyping Quick Guide
Mouse Phenotyping Quick Guide |
Cell Type |
Antigen |
Antibody |
Order Info |
Comments |
T Lymphocytes
CD3
145-2C11
14-0031
pan, developmentally regulated
T Subsets:
T cytotoxic, CD8+
CD8
53-6.7
14-0081
mature and developing T cells
T helper, CD4+
CD4
RM4-5
14-0042
mature and developing T cells
GK1.5
14-0041
T regulatory, CD4+CD25+
CD25
PC61.5
14-0251
Natural T, NK+
NK1.1
PK136
14-5941
small subset CD3+DX5+ or CD3+NK1.1+
CD49b/DX5
DX5
14-5971
B Lymphocytes
CD19
MB19-1
14-0191
pre- to mature B, not on plasma
6D5
14-0192
CD45R/B220
RA3-6B2
14-0452
also on NK progenitors, LAK, activated T
Natural Killer Cells (NK)
CD49b/DX5
DX5
14-5971
on all strains tested
NK1.1
PK136
14-5941
only on NK1.1+ strains
CD94
18d3
14-0941
Dendritic Cells (DC)
CD11c
N418
14-0114
also on some T cells
DEC-205
NLDC-145
n/a
dim
33D1 antigen
33D1
14-5884
splenic DC
Monocytes/Macrophages
CD11b
M1/70
14-0112
also on some T and NK cells
F4/80
CI:A3-1
n/a
not on blood monocytes
CD115/M-CSFR
AFS98
14-1152
CD14
Sa2-8
14-0141
not on blood monocytes
Granulocytes
Ly6G, GR-1
RB6-8C5
14-5931
blood neutrophils, BM granulocytes and myeloid lineage
Erythrocytes
TER-119
TER-119
14-5921
early to mature red cells, not on CFU-E
Endothelial Cells
CD31
390
14-0311
also low level on leukocytes and platelets
CD106/VCAM
429
14-1061
upregulated on cytokine activated endothelium, also on BM myeloid cells
MECA-32
MECA-32
n/a
Platelets
CD41
MWReg30
n/a
also on megakaryocytes
CD61
2C9.G3
14-0611
also on activated lymphocytes, granulocytes
Mast Cells
IgeRIa high affinity chain
MAR-1
14-5898
Table 4: Human Phenotyping Quick Guide
Human Phenotyping Quick Guide |
Cell Type |
Antigen |
Antibody |
Order Info |
Comments |
T Lymphocytes
CD3
HIT3a
14-0039
pan, developmentally regulated
OKT3
14-0037
pan, developmentally regulated
UCHT1
14-0038
pan, developmentally regulated
CD2
RPA-2.10
14-0029
immature and mature T
CD5
UCHT2
14-0059
immature and mature T
CD6
M-T605
n/a
immature and mature T
CD7
coming soon
T Subsets:
T cytotoxic, CD8+
CD8
RPA-T8
14-0088
mature and developing T cells
T helper, CD4+
CD4
RPA-T4
14-0049
mature and developing T cells
T regulatory, CD4+CD25+
CD25
BC96
14-0259
Natural T, NK+
CD56
MEM188
14-0569
small subset, CD3+CD56+
B Lymphocytes
CD19
HIB19
14-0199
Pre- to mature B, not on plasma
CD20
2H7
14-0209
Pre- to mature B, not on plasma
Natural Killer Cells (NK)
CD56
MEM188
14-0569
virtually all NK
CD94
DX22
14-0949
NK subset, T subset
CD158a
HP-3E4
n/a
NK subset, T subset
Dendritic Cells (DC)
CD83
HB15e
14-0839
also on some germinal center and cell lines
CD205/DEC-205
MG38
14-2059
CD197/CCR7
CCR7.6B3
14-9977
CD209/DC-SIGN
eB-h209
14-2099
Monocytes
CD14
61D3
14-0149
Endothelial Cells
CD31
WM59
14-0319
also low level on leukocytes and platelets
CD106
STA
14-0419
upregulated on cytokine activated endothelium
Platelets
CD62P/P-Selectin
AK-4
14-0628
in cytoplasmic stores of endothelium and platelets, transported to surface on activation
Mast Cells
IgeRIa high affinity chain
AER-37 (CRA-1)
14-5899
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